[ Identification | Description | Input parameters | Output parameters | Links ]
SAXSNanodiscsWithTags
ComponentA component simulating the scattering from a box-shaped, thin solution (water) of monodisperse phospholipid bilayer nanodiscs - with histidine tags still on the belt proteins.
Name | Unit | Description | Default |
AxisRatio | Axis ratio of the bilayer patch. | 1.4 | |
NumberOfLipids | Number of lipids per nanodisc. | 130.0 | |
AreaPerLipidHeadgroup | AA^2 | Area per lipid headgroup - default is POPC. | 65.0 |
HeightOfMSP | AA | Height of the belt protein - default is MSP1D1. | 24.0 |
RadiusOfGyrationForHisTag | AA | Radius of gyration for the his-tag. | 10.0 |
VolumeOfOneMSP | AA^3 | Volume of one belt protein - default is MSP1D1. | 26296.5 |
VolumeOfHeadgroup | AA^3 | Volume of one lipid headgroup - default is POPC. | 319.0 |
VolumeOfCH2Tail | AA^3 | Volume of the CH2-chains of one lipid - default is POPC. | 818.8 |
VolumeOfCH3Tail | AA^3 | Volume of the CH3-tails of one lipid - default is POPC. | 108.6 |
VolumeOfOneHisTag | AA^3 | Volume of one his-tag. | 2987.3 |
ScatteringLengthOfOneMSP | cm | Scattering length of one belt protein - default is MSP1D1. | 3.34E-9 |
ScatteringLengthOfHeadgroup | cm | Scattering length of one lipid headgroup - default is POPC. | 4.62E-11 |
ScatteringLengthOfCH2Tail | cm | Scattering length of the CH2-chains of one lipid - default is POPC. | 6.71E-11 |
ScatteringLengthOfCH3Tail | cm | Scattering length of the CH3-tails of one lipid - default is POPC. | 5.08E-12 |
ScatteringLengthOfOneHisTag | cm | Scattering length of one his-tag. | 3.89E-10 |
Roughness | Factor used to smear the interfaces of the nanodisc. | 3.5 | |
Concentration | mM | Concentration of sample. | 0.01 |
AbsorptionCrosssection | 1/m | Absorption cross section of the sample. | 0.0 |
xwidth | m | Dimension of component in the x-direction. | |
yheight | m | Dimension of component in the y-direction. | |
zdepth | m | Dimension of component in the z-direction. | |
SampleToDetectorDistance | m | Distance from sample to detector (for focusing the scattered x-rays). | |
DetectorRadius | m | Radius of the detector (for focusing the scattered x-rays). |
Name | Unit | Description | Default |
Absorption | |||
q | |||
NumberDensity | |||
DeltaRhoHead | |||
DeltaRhoBelt | |||
DeltaRhoCH2Tail | |||
DeltaRhoCH3Tail | |||
DeltaRhoTag | |||
MajorSemiAxis | |||
MinorSemiAxis | |||
ThicknessOfBelt | |||
HeightOfBelt | |||
HeightOfLipids | |||
HeightOfTails | |||
HeightOfCH3 |
SAXSNanodiscsWithTags.comp
.
[ Identification | Description | Input parameters | Output parameters | Links ]
Generated on 2021-08-13 08:57:53