[ Identification | Description | Input parameters | Output parameters | Links ]
SAXSPDBFast
ComponentThis components expands the formfactor amplitude of the protein on spherical harmonics and computes the scattering profile using these. The expansion is done on amino-acid level and does not take hydration layer into account. The component must have a valid .pdb-file as an argument.
Name | Unit | Description | Default |
NumberOfQBins | Number of points generated in inital scattering profile. | 200 | |
RhoSolvent | AA | Scattering length density of the buffer. | 9.4e-14 |
Concentration | mM | Concentration of sample. | 0.01 |
AbsorptionCrosssection | 1/m | Absorption cross section of the sample. | 0.0 |
xwidth | m | Dimension of component in the x-direction. | |
yheight | m | Dimension of component in the y-direction. | |
zdepth | m | Dimension of component in the z-direction. | |
SampleToDetectorDistance | m | Distance from sample to detector (for focusing the scattered x-rays). | |
DetectorRadius | m | Radius of the detector (for focusing the scattered x-rays). | |
qMin | AA^-1 | Lowest q-value, for which a point is generated in the scattering profile | 0.001 |
qMax | AA^-1 | Highest q-value, for which a point is generated in the scattering profile | 0.5 |
PDBFilepath | Path to the file describing the high resolution structure of the protein. | "PDBfile.pdb" |
Name | Unit | Description | Default |
Absorption | |||
q | |||
NumberDensity | |||
OrderOfHarmonics | |||
qArray | |||
IArray |
SAXSPDBFast.comp
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[ Identification | Description | Input parameters | Output parameters | Links ]
Generated on 2021-08-13 08:57:53